[rt-users] warnings from make upgrade-database from v3.8.8 to 4.0.6

Ethier, Michael methier at CGR.Harvard.edu
Tue Aug 14 12:29:10 EDT 2012


Hello,

I executed "make upgrade-database" and I get warnings, see below. "make testdeps" says all
the modules are installed. Can these warning be ignored and if not has someone hit this before
and what was the fix ? This was executed with a new version of perl installed in /usr/local/perl.

If I try this with the system /usr/bin/perl (also has all the modules needed), its complains less.

Thanks,
Mike

[root at rt1 rt-4.0.6]# make upgrade-database
/usr/local/perl/bin/perl -I/opt/rt4/local/lib -I/opt/rt4/lib sbin/rt-setup-database --action upgrade --prompt-for-dba-password
In order to create or update your RT database, this script needs to connect to your  mysql instance on db.rc.fas.harvard.edu as root
Please specify that user's database password below. If the user has no database
password, just press return.

Password:
Working with:
Type:   mysql
Host:   mysql.rc.fas.harvard.edu
Name:   rt388
User:   rtuser
DBA:    root
Enter RT version you're upgrading from: 3.8.8

Going to apply following upgrades:
* 3.8.9
* 3.9.1
* 3.9.2
* 3.9.3
* 3.9.5
* 3.9.6
* 3.9.7
* 3.9.8
* 4.0.0rc2
* 4.0.0rc4
* 4.0.0rc7
* 4.0.1
* 4.0.3
* 4.0.4
* 4.0.6

Enter RT version if you want to stop upgrade at some point,
  or leave it blank if you want apply above upgrades:

IT'S VERY IMPORTANT TO BACK UP BEFORE THIS STEP

Proceed [y/N]:y
Processing 3.8.9
Now inserting data.
[Tue Aug 14 14:38:45 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:45 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:45 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:45 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
Processing 3.9.1
Now inserting data.
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
[Tue Aug 14 14:38:56 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
Processing 3.9.2
Now inserting data.
[Tue Aug 14 14:39:02 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643, <> line 1. (/opt/rt-4.0.6/sbin/../lib                  /RT/Record.pm:641)
Processing 3.9.3
Now populating database schema.
Processing 3.9.5
Now populating database schema.
Processing 3.9.6
Now populating database schema.
Processing 3.9.7
Now populating database schema.
Now inserting data.
[Tue Aug 14 14:39:26 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643. (/opt/rt-4.0.6/sbin/../lib/RT/Record.                  pm:641)
[Tue Aug 14 14:39:26 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643. (/opt/rt-4.0.6/sbin/../lib/RT/Record.                  pm:641)
[Tue Aug 14 14:39:26 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643. (/opt/rt-4.0.6/sbin/../lib/RT/Record.                  pm:641)
[Tue Aug 14 14:39:26 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643. (/opt/rt-4.0.6/sbin/../lib/RT/Record.                  pm:641)
Processing 3.9.8
Now populating database schema.
Now inserting data.
Processing 4.0.0rc2
Now populating database schema.
Processing 4.0.0rc4
Now populating database schema.
Processing 4.0.0rc7
Now inserting data.
[Tue Aug 14 14:39:37 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643. (/opt/rt-4.0.6/sbin/../lib/RT/Record.                  pm:641)
[Tue Aug 14 14:39:37 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643. (/opt/rt-4.0.6/sbin/../lib/RT/Record.                  pm:641)
[Tue Aug 14 14:39:38 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643. (/opt/rt-4.0.6/sbin/../lib/RT/Record.                  pm:641)
[Tue Aug 14 14:39:38 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643. (/opt/rt-4.0.6/sbin/../lib/RT/Record.                  pm:641)
[Tue Aug 14 14:39:38 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643. (/opt/rt-4.0.6/sbin/../lib/RT/Record.                  pm:641)
Processing 4.0.1
Now inserting data.
[Tue Aug 14 14:39:43 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643. (/opt/rt-4.0.6/sbin/../lib/RT/Record.                  pm:641)
Processing 4.0.3
Now inserting data.
[Tue Aug 14 14:39:50 2012] [warning]: Use of uninitialized value in subroutine entry at /opt/rt-4.0.6/sbin/../lib/RT/Record.pm line 643. (/opt/rt-4.0.6/sbin/../lib/RT/Record.                  pm:641)
Processing 4.0.4
Now inserting data.
Processing 4.0.6
Now populating database schema.
Now inserting data.
Done.




With system perl in /usr/bin/perl instead:

[root at rt1 rt-4.0.6]# make upgrade-database
/usr/bin/perl -I/opt/rt4/local/lib -I/opt/rt4/lib sbin/rt-setup-database --action upgrade --prompt-for-dba-password
In order to create or update your RT database, this script needs to connect to your  mysql instance on db.rc.fas.harvard.edu as root
Please specify that user's database password below. If the user has no database
password, just press return.

Password:
Working with:
Type:   mysql
Host:   mysql.rc.fas.harvard.edu
Name:   rt388
User:   rtuser
DBA:    root
Enter RT version you're upgrading from: 3.8.8

Going to apply following upgrades:
* 3.8.9
* 3.9.1
* 3.9.2
* 3.9.3
* 3.9.5
* 3.9.6
* 3.9.7
* 3.9.8
* 4.0.0rc2
* 4.0.0rc4
* 4.0.0rc7
* 4.0.1
* 4.0.3
* 4.0.4
* 4.0.6

Enter RT version if you want to stop upgrade at some point,
  or leave it blank if you want apply above upgrades:

IT'S VERY IMPORTANT TO BACK UP BEFORE THIS STEP

Proceed [y/N]:y
Processing 3.8.9
Now inserting data.
[Tue Aug 14 16:16:05 2012] [warning]: Use of uninitialized value in string eq at /opt/rt-4.0.6/sbin/../lib/RT/Template.pm line 651, <> line 1.                           (/opt/rt-4.0.6/sbin/../lib/RT/Template.pm:651)
[Tue Aug 14 16:16:05 2012] [warning]: Use of uninitialized value in string eq at /opt/rt-4.0.6/sbin/../lib/RT/Template.pm line 651, <> line 1.                           (/opt/rt-4.0.6/sbin/../lib/RT/Template.pm:651)
[Tue Aug 14 16:16:05 2012] [warning]: Use of uninitialized value in string eq at /opt/rt-4.0.6/sbin/../lib/RT/Template.pm line 651, <> line 1.                           (/opt/rt-4.0.6/sbin/../lib/RT/Template.pm:651)
Processing 3.9.1
Now inserting data.
Processing 3.9.2
Now inserting data.
Processing 3.9.3
Now populating database schema.
Processing 3.9.5
Now populating database schema.
Processing 3.9.6
Now populating database schema.
Processing 3.9.7
Now populating database schema.
Now inserting data.
Processing 3.9.8
Now populating database schema.
Now inserting data.
Processing 4.0.0rc2
Now populating database schema.
Processing 4.0.0rc4
Now populating database schema.
Processing 4.0.0rc7
Now inserting data.
Processing 4.0.1
Now inserting data.
Processing 4.0.3
Now inserting data.
Processing 4.0.4
Now inserting data.
Processing 4.0.6
Now populating database schema.
Now inserting data.
Done.
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